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For the 2025-26 school year, there are 8 public schools serving 5,668 students in East Setauket, NY (there are , serving 615 private students). 90% of all K-12 students in East Setauket, NY are educated in public schools (compared to the NY state average of 85%). East Setauket has one of the highest concentrations of top ranked public schools in New York.

The top ranked public schools in East Setauket, NY are Ward Melville Senior High School, Paul J Gelinas Junior High School and Nassakeag Elementary School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

East Setauket, NY public schools have an average math proficiency score of 81% (versus the New York public school average of 52%), and reading proficiency score of 72% (versus the 49% statewide average). Schools in East Setauket have an average ranking of 10/10, which is in the top 5% of New York public schools.

Minority enrollment is 32% of the student body (majority Asian), which is less than the New York public school average of 60% (majority Hispanic).