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For the 2025-26 school year, there are 2 public middle schools serving 55 students in Naknek, AK.

The top ranked public middle schools in Naknek, AK are Bristol Bay Correspondence and Bristol Bay Middle/high School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Naknek, AK public middle schools have an average math proficiency score of 20% (versus the Alaska public middle school average of 30%), and reading proficiency score of 20% (versus the 28% statewide average). Middle schools in Naknek have an average ranking of 6/10, which is in the top 50% of Alaska public middle schools.

Minority enrollment is 80% of the student body (majority American Indian), which is more than the Alaska public middle school average of 53% (majority American Indian).