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For the 2025-26 school year, there are 3 public schools serving 662 students in Kotzebue, AK (there are , serving 12 private students). 98% of all K-12 students in Kotzebue, AK are educated in public schools (compared to the AK state average of 95%).

The top ranked public schools in Kotzebue, AK are Nwabsd Home School, Kotzebue Middle/high School and June Nelson Elementary School. Overall testing rank is based on a school's combined math and reading proficiency test score ranking.

Kotzebue, AK public schools have an average math proficiency score of 7% (versus the Alaska public school average of 33%), and reading proficiency score of 11% (versus the 30% statewide average). Schools in Kotzebue have an average ranking of 3/10, which is in the bottom 50% of Alaska public schools.

Minority enrollment is 97% of the student body (majority American Indian), which is more than the Alaska public school average of 53% (majority American Indian).